CisGenome Browser | Tool name | CisGenome Browser |
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| URL | http://www.stanford.edu/group/wonglab/jiangh/browser/ |
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| Important features | 1. An open source, platform independent tool, called CisGenome Browser, which can work together with any other data analysis program to serve as a flexible component for genomic data visualization.
2. It can also work by itself as a standalone genome browser. CisGenome Browser is a convenient tool for data sharing between labs.
3. It has features that are specifically designed for ultra high-throughput sequencing data visualization.
4. CisGenome Browser is suitable for visualizing microarray/sequencing/other biological data. It runs locally so that there is no need to upload the user data via internet like adding custom tracks when using UCSC Genome Browser or any other online browsers. |
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| Citations | Jiang H, Wang F, Dyer NP, Wong WH. CisGenome Browser: a flexible tool for
genomic data visualization. Bioinformatics. 2010 Jul 15;26(14):1781-2. Epub 2010
May 30. PubMed PMID: 20513664; PubMed Central PMCID: PMC2894522. |
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| Year of publication | 2010 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | Visualization, ChIP seq analysis |
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| Category | Free, Downloadable |
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| Operating system | Windows, Linux and Mac |
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| Operating language | C++ |
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| Maintained by | Juergen Kleffe |
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